| Protein | Organism Specification | AC Entry | Gene name(s) | Description |
| DNLI_METJA | Methanococcus jannaschii. | Q57635 | Name=lig; OrderedLocusNames=MJ0171; | DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). |
| FEN_METJA | Methanococcus jannaschii. | Q58839 | Name=fen; OrderedLocusNames=MJ1444; | Flap structure-specific endonuclease (EC 3.1.-.-). |
| DNLI_METJA | Methanococcus jannaschii. | Q57635 | Name=lig; OrderedLocusNames=MJ0171; | DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). |
| FEN_METJA | Methanococcus jannaschii. | Q58839 | Name=fen; OrderedLocusNames=MJ1444; | Flap structure-specific endonuclease (EC 3.1.-.-). |
| OGG1_METJA | Methanococcus jannaschii. | Q58134 | Name=ogg; OrderedLocusNames=MJ0724; | N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA glycosylase(EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(AP lyase)]. |
| OGT_METJA | Methanococcus jannaschii. | Q58924 | Name=ogt; OrderedLocusNames=MJ1529; | Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase). |
| RADA_METJA | Methanococcus jannaschii. | Q49593 Q58279 | Name=radA; OrderedLocusNames=MJ0869; | DNA repair and recombination protein radA. |
| RADB_METJA | Methanococcus jannaschii. | Q57702 | Name=radB; OrderedLocusNames=MJ0254; | DNA repair and recombination protein radB. |
| RPA_METJA | Methanococcus jannaschii. | Q58559 | Name=rpa; OrderedLocusNames=MJ1159; | Replication factor A (RP-A) (RF-A) (Replication factor-A protein 1)(Single-stranded DNA-binding protein) (mjaSSB). |
| Y133_METJA | Methanococcus jannaschii. | Q57597 | OrderedLocusNames=MJ0133; | Hypothetical protein MJ0133. |
| Y414_METJA | Methanococcus jannaschii. | Q57857 | OrderedLocusNames=MJ0414; | Hypothetical protein MJ0414. |
| Y613_METJA | Methanococcus jannaschii. | Q58030 | OrderedLocusNames=MJ0613; | Putative endonuclease MJ0613. |
