| Protein | Organism Specification | AC Entry | Gene name(s) | Description |
| DNLJ_THEMA | Thermotoga maritima. | Q9WXV5 | Name=ligA; OrderedLocusNames=TM0100; | DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD+]). |
| END3_THEMA | Thermotoga maritima. | Q9WYK0 | Name=nth; OrderedLocusNames=TM0366; | Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site)lyase). |
| END4_THEMA | Thermotoga maritima. | Q9WYJ7 | Name=nfo; OrderedLocusNames=TM0362; | Probable endonuclease IV (EC 3.1.21.2) (Endodeoxyribonuclease IV). |
| DNLJ_THEMA | Thermotoga maritima. | Q9WXV5 | Name=ligA; OrderedLocusNames=TM0100; | DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD+]). |
| END3_THEMA | Thermotoga maritima. | Q9WYK0 | Name=nth; OrderedLocusNames=TM0366; | Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site)lyase). |
| END4_THEMA | Thermotoga maritima. | Q9WYJ7 | Name=nfo; OrderedLocusNames=TM0362; | Probable endonuclease IV (EC 3.1.21.2) (Endodeoxyribonuclease IV). |
| LEXA_THEMA | Thermotoga maritima. | O33927 | Name=lexA; OrderedLocusNames=TM1082; | LexA repressor (EC 3.4.21.88). |
| MUTL_THEMA | Thermotoga maritima. | P74925 Q9S5W9 | Name=mutL; OrderedLocusNames=TM0022; | DNA mismatch repair protein mutL. |
| MUTS_THEMA | Thermotoga maritima. | P74926 | Name=mutS; OrderedLocusNames=TM1719; | DNA mismatch repair protein mutS. |
| NFI_THEMA | Thermotoga maritima. | Q9X2H9 | Name=nfi; OrderedLocusNames=TM1865; | Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)(Deoxyribonuclease V) (DNase V). |
| OGG1_THEMA | Thermotoga maritima. | Q9X2E1 | Name=ogg; OrderedLocusNames=TM1821; | Probable N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNAglycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase(EC 4.2.99.18) (AP lyase)]. |
| RADC_THEMA | Thermotoga maritima. | Q9X1P3 | Name=radC; OrderedLocusNames=TM1557; | DNA repair protein radC homolog. |
| RECA_THEMA | Thermotoga maritima. | P36203 | Name=recA; OrderedLocusNames=TM1859; | Protein recA (Recombinase A). |
| RECX_THEMA | Thermotoga maritima. | Q9X2H3 | Name=recX; OrderedLocusNames=TM1858; | Regulatory protein recX. |
| RUVA_THEMA | Thermotoga maritima. | Q9WY12 | Name=ruvA; OrderedLocusNames=TM0165; | Holliday junction ATP-dependent DNA helicase ruvA (EC 3.6.1.-). |
| RUVB_THEMA | Thermotoga maritima. | Q56313 | Name=ruvB; OrderedLocusNames=TM1730; | Holliday junction ATP-dependent DNA helicase ruvB (EC 3.6.1.-). |
| RUVC_THEMA | Thermotoga maritima. | Q9WZ45 | Name=ruvC; OrderedLocusNames=TM0575; | Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Hollidayjunction nuclease ruvC) (Holliday juction resolvase ruvC). |
| RUVX_THEMA | Thermotoga maritima. | Q9X1N1 | OrderedLocusNames=TM1545; | Putative Holliday junction resolvase (EC 3.1.-.-). |
| SSB_THEMA | Thermotoga maritima. | Q9WZ73 | Name=ssb; OrderedLocusNames=TM0604; | Single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein). |
| UVRA_THEMA | Thermotoga maritima. | Q9WYV0 | Name=uvrA; OrderedLocusNames=TM0480; | UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A). |
| UVRB_THEMA | Thermotoga maritima. | Q9X282 | Name=uvrB; OrderedLocusNames=TM1761; | UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B). |
| UVRC_THEMA | Thermotoga maritima. | Q9WYA3 | Name=uvrC; OrderedLocusNames=TM0265; | UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C). |
| Y370_THEMA | Thermotoga maritima. | Q9WYK4 | OrderedLocusNames=TM0370; | UPF0273 protein TM0370. |
