| Protein | Organism Specification | AC Entry | Gene name(s) | Description |
| LEXA_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WCK0 | Name=lexA; OrderedLocusNames=BB2271; | LexA repressor (EC 3.4.21.88). |
| MUTS_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WLT5 | Name=mutS; OrderedLocusNames=BB1660; | DNA mismatch repair protein mutS. |
| RADC_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WHF0 | Name=radC; OrderedLocusNames=BB3258; | DNA repair protein radC homolog. |
| RECA_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | P0A449 P17740 | Name=recA; OrderedLocusNames=BB2076; | Protein recA (Recombinase A). |
| RECR_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WMF1 | Name=recR; OrderedLocusNames=BB1440; | Recombination protein recR. |
| RUVA_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WGB6 | Name=ruvA; OrderedLocusNames=BB4003; | Holliday junction DNA helicase ruvA. |
| RUVB_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WGB3 | Name=ruvB; OrderedLocusNames=BB4006; | Holliday junction ATP-dependent DNA helicase ruvB (EC 3.6.1.-). |
| RUVC_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WGB7 | Name=ruvC; OrderedLocusNames=BB4002; | Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Hollidayjunction nuclease ruvC) (Holliday juction resolvase ruvC). |
| RUVX_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WF76 | OrderedLocusNames=BB4404; | Putative Holliday junction resolvase (EC 3.1.-.-). |
| SSB_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | P66847 P59929 Q7VT88 Q7WR79 | Name=ssb; OrderedLocusNames=BB0077; | Single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein). |
| UNG_BORBR | Bordetella bronchiseptica (Alcaligenes bronchisepticus). | Q7WQW5 | Name=ung; OrderedLocusNames=BB0210; | Uracil-DNA glycosylase (EC 3.2.2.-) (UDG). |