| Protein | Organism Specification | AC Entry | Gene name(s) | Description |
| FPG_BORPA | Bordetella parapertussis. | Q7W185 | Name=mutM; Synonyms=fpg; OrderedLocusNames=BPP0813; | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (Fapy-DNAglycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM)(EC 4.2.99.18) (AP lyase mutM). |
| LEXA_BORPA | Bordetella parapertussis. | Q7W0T5 | Name=lexA; OrderedLocusNames=BPP2023; | LexA repressor (EC 3.4.21.88). |
| MUTS_BORPA | Bordetella parapertussis. | Q7W880 | Name=mutS; OrderedLocusNames=BPP2265; | DNA mismatch repair protein mutS. |
| RADC_BORPA | Bordetella parapertussis. | Q7W9B6 | Name=radC; OrderedLocusNames=BPP1850; | DNA repair protein radC homolog. |
| RECA_BORPA | Bordetella parapertussis. | P0A450 P17740 | Name=recA; OrderedLocusNames=BPP2633; | Protein recA (Recombinase A). |
| RECR_BORPA | Bordetella parapertussis. | Q7WAY7 | Name=recR; OrderedLocusNames=BPP1223; | Recombination protein recR. |
| RUVA_BORPA | Bordetella parapertussis. | Q7W4T9 | Name=ruvA; OrderedLocusNames=BPP3568; | Holliday junction ATP-dependent DNA helicase ruvA (EC 3.6.1.-). |
| RUVB_BORPA | Bordetella parapertussis. | Q7W4T6 | Name=ruvB; OrderedLocusNames=BPP3571; | Holliday junction ATP-dependent DNA helicase ruvB (EC 3.6.1.-). |
| RUVC_BORPA | Bordetella parapertussis. | Q7W4U0 | Name=ruvC; OrderedLocusNames=BPP3567; | Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Hollidayjunction nuclease ruvC) (Holliday juction resolvase ruvC). |
| RUVX_BORPA | Bordetella parapertussis. | Q7W3U6 | OrderedLocusNames=BPP3931; | Putative Holliday junction resolvase (EC 3.1.-.-). |
| SSB_BORPA | Bordetella parapertussis. | P59928 Q7W2B2 | Name=ssb; OrderedLocusNames=BPP0077; | Single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein). |
| UNG_BORPA | Bordetella parapertussis. | Q7W1Y7 | Name=ung; OrderedLocusNames=BPP0206; | Uracil-DNA glycosylase (EC 3.2.2.-) (UDG). |