| Protein | Organism Specification | AC Entry | Gene name(s) | Description |
| FPG_BORPE | Bordetella pertussis. | Q7VUG7 | Name=mutM; Synonyms=fpg; OrderedLocusNames=BP3129; | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (Fapy-DNAglycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM)(EC 4.2.99.18) (AP lyase mutM). |
| LEXA_BORPE | Bordetella pertussis. | Q7VRY0 | Name=lexA; OrderedLocusNames=BP1794; | LexA repressor (EC 3.4.21.88). |
| MUTS_BORPE | Bordetella pertussis. | Q7VY01 | Name=mutS; OrderedLocusNames=BP1566; | DNA mismatch repair protein mutS. |
| RADC_BORPE | Bordetella pertussis. | Q7VYS4 | Name=radC; OrderedLocusNames=BP1235; | DNA repair protein radC homolog. |
| RECA_BORPE | Bordetella pertussis. | P0A448 P17740 | Name=recA; OrderedLocusNames=BP2546; | Protein recA (Recombinase A). |
| RECR_BORPE | Bordetella pertussis. | Q7VY12 | Name=recR; OrderedLocusNames=BP1551; | Recombination protein recR. |
| RUVA_BORPE | Bordetella pertussis. | Q7VTT9 | Name=ruvA; OrderedLocusNames=BP3418; | Holliday junction ATP-dependent DNA helicase ruvA (EC 3.6.1.-). |
| RUVB_BORPE | Bordetella pertussis. | Q7VTT6 | Name=ruvB; OrderedLocusNames=BP3421; | Holliday junction ATP-dependent DNA helicase ruvB (EC 3.6.1.-). |
| RUVC_BORPE | Bordetella pertussis. | Q7VTU0 | Name=ruvC; OrderedLocusNames=BP3417; | Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Hollidayjunction nuclease ruvC) (Holliday juction resolvase ruvC). |
| RUVX_BORPE | Bordetella pertussis. | Q7W045 | OrderedLocusNames=BP0320; | Putative Holliday junction resolvase (EC 3.1.-.-). |
| SSB_BORPE | Bordetella pertussis. | P66846 P59929 Q7VT88 Q7WR79 | Name=ssb; OrderedLocusNames=BP3662; | Single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein). |
| UNG_BORPE | Bordetella pertussis. | Q7VUM8 | Name=ung; OrderedLocusNames=BP3056; | Uracil-DNA glycosylase (EC 3.2.2.-) (UDG). |