| Protein | Organism Specification | AC Entry | Gene name(s) | Description |
| CHO_SHIFL | Shigella flexneri. | P59361 | Name=cho; OrderedLocusNames=SF1485, S1602; | Excinuclease cho (EC 3.1.25.-) (Endonuclease cho) (UvrC homologprotein). |
| DING_SHIFL | Shigella flexneri. | Q83LU7 Q7UD89 | Name=dinG; OrderedLocusNames=SF0748, S0790; | Probable ATP-dependent helicase dinG (EC 3.6.1.-) (DNA-damage-inducible protein G). |
| DINI_SHIFL | Shigella flexneri. | P0ABR4 Q47143 Q9R2Y7 | Name=dinI; OrderedLocusNames=SF1067, S1145; | DNA-damage-inducible protein I. |
| END4_SHIFL | Shigella flexneri. | Q83QW6 | Name=nfo; OrderedLocusNames=SF2244, S2373; | Probable endonuclease IV (EC 3.1.21.2) (Endodeoxyribonuclease IV). |
| END8_SHIFL | Shigella flexneri. | Q83LZ7 Q7C2P2 | Name=nei; OrderedLocusNames=SF0583, S0596; | Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC 3.2.2.-)(EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei). |
| CHO_SHIFL | Shigella flexneri. | P59361 | Name=cho; OrderedLocusNames=SF1485, S1602; | Excinuclease cho (EC 3.1.25.-) (Endonuclease cho) (UvrC homologprotein). |
| DING_SHIFL | Shigella flexneri. | Q83LU7 Q7UD89 | Name=dinG; OrderedLocusNames=SF0748, S0790; | Probable ATP-dependent helicase dinG (EC 3.6.1.-) (DNA-damage-inducible protein G). |
| DINI_SHIFL | Shigella flexneri. | P0ABR4 Q47143 Q9R2Y7 | Name=dinI; OrderedLocusNames=SF1067, S1145; | DNA-damage-inducible protein I. |
| END4_SHIFL | Shigella flexneri. | Q83QW6 | Name=nfo; OrderedLocusNames=SF2244, S2373; | Probable endonuclease IV (EC 3.1.21.2) (Endodeoxyribonuclease IV). |
| END8_SHIFL | Shigella flexneri. | Q83LZ7 Q7C2P2 | Name=nei; OrderedLocusNames=SF0583, S0596; | Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC 3.2.2.-)(EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei). |
| FPG_SHIFL | Shigella flexneri. | P64149 Q8XDA9 | Name=mutM; Synonyms=fpg; OrderedLocusNames=SF3674, S4094; | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (Fapy-DNAglycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM)(EC 4.2.99.18) (AP lyase mutM). |
| IMPC_SHIFL | Shigella flexneri. | P0A1G2 P18643 | Name=impC; | Protein impC. |
| LEXA_SHIFL | Shigella flexneri. | P0A7C5 P03033 | Name=lexA; OrderedLocusNames=SF4162, S3569; | LexA repressor (EC 3.4.21.88). |
| MUTH_SHIFL | Shigella flexneri. | Q83QC1 Q7UBR5 | Name=mutH; OrderedLocusNames=SF2841, S3039; | DNA mismatch repair protein mutH (Methyl-directed mismatch repairprotein). |
| MUTS_SHIFL | Shigella flexneri. | Q83QE9 | Name=mutS; OrderedLocusNames=SF2752, S2944; | DNA mismatch repair protein mutS. |
| NFI_SHIFL | Shigella flexneri. | Q83MJ0 Q7BZH9 | Name=nfi; OrderedLocusNames=SF4070, S3665; | Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)(Deoxyribonuclease V) (DNase V). |
| NUDB_SHIFL | Shigella flexneri. | P0AFC2 P24236 | Name=nudB; OrderedLocusNames=SF1875, S1941; | dATP pyrophosphohydrolase (EC 3.6.1.-). |
| OGT_SHIFL | Shigella flexneri. | P0AFH1 P09168 P78284 | Name=ogt; OrderedLocusNames=SF1835, S1435; | Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase). |
| RADC_SHIFL | Shigella flexneri. | P65959 Q8XDA3 | Name=radC; OrderedLocusNames=SF3677, S4091; | DNA repair protein radC. |
| RECA_SHIFL | Shigella flexneri. | P0A7G9 P03017 P26347 P78213 | Name=recA; OrderedLocusNames=SF2722, S2913; | Protein recA (Recombinase A). |
| RECF_SHIFL | Shigella flexneri. | Q7BZ80 Q83PL0 | Name=recF; OrderedLocusNames=SF3764, S4007; | DNA replication and repair protein recF. |
| RECO_SHIFL | Shigella flexneri. | Q83QI6 | Name=recO; OrderedLocusNames=SF2627, S2800; | DNA repair protein recO (Recombination protein O). |
| RECR_SHIFL | Shigella flexneri. | P0A7H9 P12727 | Name=recR; OrderedLocusNames=SF0417, S0424; | Recombination protein recR. |
| RECX_SHIFL | Shigella flexneri. | P66001 P59208 Q8X875 | Name=recX; OrderedLocusNames=SF2721, S2912; | Regulatory protein recX. |
| RUVA_SHIFL | Shigella flexneri. | Q83KR4 Q7UAE8 | Name=ruvA; OrderedLocusNames=SF1871, S1937; | Holliday junction ATP-dependent DNA helicase ruvA (EC 3.6.1.-). |
| RUVB_SHIFL | Shigella flexneri. | Q83KR5 | Name=ruvB; OrderedLocusNames=SF1870, S1936; | Holliday junction ATP-dependent DNA helicase ruvB (EC 3.6.1.-). |
| RUVC_SHIFL | Shigella flexneri. | Q7UAE7 Q83R66 | Name=ruvC; OrderedLocusNames=SF1873, S1939; | Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Hollidayjunction nuclease ruvC) (Holliday juction resolvase ruvC). |
| RUVX_SHIFL | Shigella flexneri. | Q83JS4 Q7C028 | Name=yqgF; OrderedLocusNames=SF2940, S3144; | Putative Holliday junction resolvase (EC 3.1.-.-). |
| SSB_SHIFL | Shigella flexneri. | P0AGE3 P02339 | Name=ssb; OrderedLocusNames=SF4145, S3584; | Single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein). |
| UMUD_SHIFL | Shigella flexneri. | P0AG13 P04153 | Name=umuD; OrderedLocusNames=SF1172, S1260; | Protein umuD (EC 3.4.21.-) [Contains: Protein umuD']. |
| UVRA_SHIFL | Shigella flexneri. | P0A699 P07671 P76788 | Name=uvrA; Synonyms=dinE; OrderedLocusNames=SF4146, S3583; | UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A). |
| YBAZ_SHIFL | Shigella flexneri. | P0AFP3 P75707 P77119 | Name=ybaZ; OrderedLocusNames=SF0400, S0406; | Hypothetical protein ybaZ. |
| YHBQ_SHIFL | Shigella flexneri. | Q83JG5 Q7UBF9 | Name=yhbQ; OrderedLocusNames=SF3196, S3413; | UPF0213 protein yhbQ. |
