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Description:
HTH-type transcriptional regulator kdgR (Kdg operon repressor).
Molecular weight: 37858
View which proteins in this organism that is involved with DNA Repair;
classified after biological processes (using data from the GOA project):
DNA repair( GO:0006281 )
Important dates:
01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
01-OCT-1996, sequence version 1.
07-MAR-2006, entry version 42.
Phylogenetic order:
Bacteria Firmicutes Bacillales Bacillaceae Bacillus.
To calculate the pI (Isoelectric point - the pH where a protein has a neutral charge),
go to this page and enter the protein ID (e.g 3MG_ECOLI): http://us.expasy.org/tools/pi_tool.html
Links to references in other databases for protein KDGR_BACSU:
| Database | Pointer | Add. info#1 | Add. info#2 |
| EMBL | L47838 | AAB38478.1 | - |
| EMBL | Z99115 | CAB14129.1 | - |
| PIR | B69648 | B69648. | |
| HSSP | P03023 | 1LQC | |
| GenomeReviews | AL009126_GR | BSU22120.1 | |
| SubtiList | BG11398 | kdgR. | |
| BioCyc | BSUB1423:BSU2212-MONOMER | -.1 | |
| InterPro | IPR012309 | DNA_ligase_A_C. | |
| InterPro | IPR000843 | HTH_LacI. | |
| InterPro | IPR001761 | Peripla_BP_Lac1. | |
| Pfam | PF00356 | LacI | 1. |
| Pfam | PF00532 | Peripla_BP_1 | 1. |
| PRINTS | PR00036 | HTHLACI. | |
| SMART | SM00354 | HTH_LACI | 1. |
| PROSITE | PS00356 | HTH_LACI_1 | 1. |
| PROSITE | PS50932 | HTH_LACI_2 | 1. |
Keywords:
Complete proteome; DNA-binding; Repressor; Transcription; Transcription regulation.
References:
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168 / Marburg;
RX MEDLINE=96349105; PubMed=8760912;
RA Sorokin A.V., Azevedo V., Zumstein E., Galleron N., Ehrlich S.D.,
RA Serror P.;
RT "Sequence analysis of the Bacillus subtilis chromosome region between
RT the serA and kdg loci cloned in a yeast artificial chromosome.";
RL Microbiology 142:2005-2016(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX MEDLINE=98044033; PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G.,
RA Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S.,
RA Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S.,
RA Brouillet S., Bruschi C.V., Caldwell B., Capuano V., Carter N.M.,
RA Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A.,
RA Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T.,
RA Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D.,
RA Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N.,
RA Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G.,
RA Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A.,
RA Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M.,
RA Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M.,
RA Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S.,
RA Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G.,
RA Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B.,
RA Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R.,
RA Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P.,
RA Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H.,
RA Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P.,
RA Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F.,
RA Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H.,
RA Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
Feature:
CHAIN 1 339 HTH-type transcriptional regulator kdgR.
/FTId=PRO_0000107961.
DOMAIN 9 64 HTH lacI-type.
DNA_BIND 11 30 H-T-H motif (Potential).
Comments:
-!- FUNCTION: Transcriptional repressor of the kdg operon for pectin
utilization.
-!- SIMILARITY: Contains 1 HTH lacI-type DNA-binding domain.
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Sequence length: 339
MKKKTTGHTT IKDVAECAGV SKSTVSRYIN GKIDAISPEK VKNIKKAIAE LNYRPSKMAQ
GLKIKKSKLI GFVVADITNP FSVAAFRGVE EVCDQYGYSI MVCNTDNSPE KEREMLLKLE
AHSVEGLILN ATGENKDVLR AFAEQQIPTI LIDRKLPDLK LDTVTTDNRW ITKEILQKVY
SKGYTDVALF TEPISSISPR AERAAVYQEM ASVQNVNGLV RLHEIDVKDK EQLKAELRSF
HKEMPEQKKA ILALNGLIML KIISCMEELG LRIPQDIGIA GFDDTEWYKL IGPGITTIAQ
PSHDMGRTAM ERVLKRIEGD KGAPQTIELE AKVIMRKSL