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| Identifier | Database description | Reference |
|---|---|---|
| EMBL | Nucleotide sequence database of EMBL/EBI (see 3.12.6) | Nucleic Acids Res. 30:21-26(2002); PMID: 11752244 |
| Aarhus/Ghent-2DPAGE | Human keratinocyte 2D gel protein database from Aarhus and Ghent universities | FEBS Lett. 430:64-72(1998); PMID: 9678596 |
| ANU-2DPAGE | Australian National University 2-DE database | Proteomics 1:1149-1161(2001); PMID: 11990509 |
| COMPLUYEAST-2DPAGE | 2-DE database at Universidad Complutense de Madrid | J. Chromatogr. B. Biomed. Sci. Appl. (in press) |
| DictyDb | Dictyostelium discoideum genome database | (In) Maeda Y., Inouyea K. and Takeuchi I. (eds.); Dictyostelium. A Model System for Cell and Developmental Biology. pp.471-477, Universal Academic Press, Tokyo (1997) |
| ECO2DBASE | Escherichia coli gene-protein database (2D gel spots) (ECO2DBASE) | Electrophoresis 20:2149-2159(1999); PMID: 9298644 |
| EcoGene | Escherichia coli K12 genome database (EcoGene) | Nucleic Acids Res. 28:60-64(2000); PMID: 10592181 |
| FlyBase | Drosophila genome database (FlyBase) | Nucleic Acids Res. 30:106-108(2002); PMID: 11752267 |
| Genew | Human gene nomenclature database (Genew) | Nucleic Acids Res. 30:169-171(2002); PMID: 11752283 |
| GK | Genome Knowledgebase (GK) | |
| GlycoSuiteDB | Database of glycan structures (GlycoSuiteDB) | Nucleic Acids Res. 29:332-335(2001); PMID: 11125129 |
| GO | Gene Ontology (GO) database | Genome Res. 12:1982-1991(2002); PMID: 12466303 |
| Gramene | Comparative mapping resource for grains (Gramene) | Nucleic Acids Res. 30:103-105(2002); PMID: 11752266 |
| HAMAP | Database of microbial protein families (HAMAP) | Comput. Biol. Chem. 27:49-58(2003) |
| HIV | HIV sequence database | Kuiken C.L. et al., In: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. |
| HSC-2DPAGE | Harefield hospital 2D gel protein databases (HSC-2DPAGE) | Electrophoresis 18:471-479(1997); PMID: 9150926 |
| HSSP | Homology-derived secondary structure of proteins database (HSSP) | Nucleic Acids Res. 27:244-247(1999); PMID: 9847191 |
| InterPro | Integrated resource of protein families, domains and functional sites (InterPro) | Nucleic Acids Res. 31:315-318(2003); PMID: 12520011 |
| Leproma | Mycobacterium leprae genome database (Leproma) | Lepr. Rev. 72:470-477(2001); PMID: 11826483 |
| MaizeDB | Maize genome database (MaizeDB) | Polacco M., Chen S., Coe E., Hancock D.C., Kross H., Schroeder S. and Vargo C.; Maize Genetics Conference Abstracts 41 (1999) |
| Maize-2DPAGE | Maize genome 2D Electrophoresis database (Maize-2DPAGE) | Theor. Appl. Genet. 93:997-1005(1996) |
| MEROPS | Peptidase database (MEROPS) | Nucleic Acids Res. 30:343-346(2002); PMID: 11752332 |
| MGD | Mouse genome database (MGD) | Nucleic Acids Res. 30:113-115(2002); PMID: 11752269 |
| MIM | Mendelian Inheritance in Man Database (MIM) | Nucleic Acids Res. 30:52-55(2002); PMID: 11752252 |
| MypuList | Mycoplasma pulmonis genome database (MypuList) | |
| PDB | 3D-macromolecular structure Protein Data Bank (PDB) | Nucleic Acids Res. 30:245-248(2002); PMID: 11752306 |
| Pfam | Pfam protein domain database | Nucleic Acids Res. 30:276-280(2002); PMID: 11752314 |
| PHCI-2DPAGE | Parasite host cell interaction 2D-PAGE database | |
| PhosSite | Phosphorylation Site Database for prokaryotic proteins | (In) Leslie M. (ed.); NetWatch. Science 294:1623-1623(2001) |
| PIR | Protein sequence database of the Protein Information Resource (PIR) | Nucleic Acids Res. 30:35-37(2002); PMID: 11752247 |
| PIRSF | PIR SuperFamilies of iProClass | Nucleic Acids Res. 31:390-392(2003); PMID: 12520030 |
| PMMA-2DPAGE | Purkyne Military Medical Academy 2D-PAGE database | |
| PRINTS | Protein Fingerprint database (PRINTS) | Nucleic Acids Res. 30:239-241(2002); PMID: 11752304 |
| ProDom | ProDom protein domain database | Brief. Bioinform. 3:246-251(2002); PMID: 12230033 |
| PROSITE | PROSITE protein domain and family database (see 3.12.7) | Nucleic Acids Res. 30:235-238(2002); PMID: 11752303 |
| REBASE | Restriction enzymes and methylases database (REBASE) | Nucleic Acids Res. 29:268-269(2001); PMID: 11125108 |
| SGD | Saccharomyces Genome Database (SGD) | Nucleic Acids Res. 30:69-72(2002); PMID: 11752257 |
| Siena-2DPAGE | 2D-PAGE database from the Department of Molecular Biology, University of Siena, Italy | |
| SMART | Simple Modular Architecture Research Tool (SMART) | Nucleic Acids Res. 30:242-244(2002); PMID: 11752305 |
| StyGene | Salmonella typhimurium LT2 genome database (StyGene) | |
| SubtiList | Bacillus subtilis 168 genome database (SubtiList) | Nucleic Acids Res. 30:62-65(2002); PMID: 11752255 |
| SWISS-2DPAGE | 2D-PAGE database from the Geneva University Hospital (SWISS-2DPAGE) | Nucleic Acids Res. 28:286-288(2000); PMID: 10592248 |
| TIGR | The bacterial databases of 'The Institute of Genome Research' (TIGR) | Nucleic Acid Res. 29:159-164(2001); PMID: 11125077 |
| TIGRFAMs | TIGR protein family database (TIGRFAMs) | Nucleic Acids Res. 29:41-43(2001); PMID: 11125044 |
| TRANSFAC | Transcription factor database (TRANSFAC) | Nucleic Acids Res. 29:281-283(2001); PMID: 11125113 |
| TubercuList | Mycobacterium tuberculosis H37Rv genome database (TubercuList) | FEBS Lett. 452:7-10(1999); PMID: 10376668 |
| WormPep | Caenorhabditis elegans genome sequencing project protein database (WormPep) | Genomics 46:200-216(1997); PMID: 9417907 |
| ZFIN | Zebrafish Information Network genome database (ZFIN) | Nucleic Acids Res. 29:87-90(2001); PMID: 11125057 |