| Process | Archaeoglobus fulgidus | Drosophila melanogaster | Escherichia coli | Homo sapiens | Saccharomyces cerevisiae |
| DNA repair( GO:0006281 ) | DNLI_ARCFU FEN_ARCFU NFI_ARCFU OGG1_ARCFU OGT_ARCFU RADA_ARCFU RADB_ARCFU | APTX_DROME ATRX_DROME CAF1_DROME EXO1_DROME KC1A_DROME MEI9_DROME MSH2_DROME MSH6_DROME OGG1_DROME RFC2_DROME RLA0_DROME RRP1_DROME RS3_DROME XPA_DROME XPC_DROME | 3MG1_ECOLI 3MG2_ECOLI ADA_ECOLI ALKB_ECOLI CHO_ECOLI DING_ECOLI DINI_ECOLI DNLJ_ECOLI DPO1_ECOLI DPO2_ECOLI DPO4_ECOLI END3_ECOLI END4_ECOLI END8_ECOLI EX1_ECOLI EX3_ECOLI EX5A_ECOLI EX5B_ECOLI EX5C_ECOLI EXOX_ECOLI FPG_ECOLI HELD_ECOLI IMPC_ECOLI LEXA_ECOLI MFD_ECOLI MODF_ECOLI MUCA_ECOLI MUCB_ECOLI MUG_ECOLI MUTH_ECOLI MUTL_ECOLI MUTS_ECOLI MUTT_ECOLI MUTY_ECOLI NFI_ECOLI NUDB_ECOLI OGT_ECOLI PHR_ECOLI RADA_ECOLI RADC_ECOLI RECA_ECOLI RECF_ECOLI RECG_ECOLI RECJ_ECOLI RECN_ECOLI RECO_ECOLI RECQ_ECOLI RECR_ECOLI RECX_ECOLI REP_ECOLI RUS_ECOLI RUVA_ECOLI RUVB_ECOLI RUVC_ECOLI RUVX_ECOLI SSBR_ECOLI SSB_ECOLI SULA_ECOLI UMUC_ECOLI UMUD_ECOLI UNG_ECOLI UVP1_ECOLI UVRA_ECOLI UVRB_ECOLI UVRC_ECOLI UVRD_ECOLI VSR_ECOLI YBAZ_ECOLI YEES_ECOLI YFJY_ECOLI YHBQ_ECOLI YICF_ECOLI YKFG_ECOLI | 3MG_HUMAN 8ODP_HUMAN APTX_HUMAN ATM_HUMAN ATRX_HUMAN ATR_HUMAN BLM_HUMAN BTG2_HUMAN CCNH_HUMAN CDK7_HUMAN CHK1_HUMAN DDB1_HUMAN DDB2_HUMAN DNL1_HUMAN DNL3_HUMAN DNL4_HUMAN DPOQ_HUMAN EMSY_HUMAN EXO1_HUMAN FEN1_HUMAN HMG1_HUMAN HMG2_HUMAN KC1D_HUMAN KC1E_HUMAN KU70_HUMAN KU86_HUMAN MAT1_HUMAN MBD4_HUMAN MCA3_HUMAN MDC1_HUMAN MGMT_HUMAN MLH1_HUMAN MLH3_HUMAN MSH2_HUMAN MSH3_HUMAN MSH4_HUMAN MSH6_HUMAN NONO_HUMAN OGG1_HUMAN P53_HUMAN PCNA_HUMAN PML_HUMAN PMS1_HUMAN PMS2_HUMAN PNKP_HUMAN POLH_HUMAN POLI_HUMAN POLK_HUMAN REV1_HUMAN RFA1_HUMAN RFA3_HUMAN RFC4_HUMAN RFC5_HUMAN SFPQ_HUMAN SMC3_HUMAN TDG_HUMAN TERA_HUMAN TYSY_HUMAN UBP1_HUMAN UNG2_HUMAN UNG_HUMAN XAB2_HUMAN XPA_HUMAN XPC_HUMAN XRN2_HUMAN | AF9_YEAST APN1_YEAST APN2_YEAST ARP4_YEAST BDF1_YEAST CAC2_YEAST CDC1_YEAST CTF4_YEAST DIN7_YEAST DNA2_YEAST DNL4_YEAST DNLI_YEAST DPO4_YEAST DPOZ_YEAST EAF3_YEAST EAF5_YEAST EAF6_YEAST EAF7_YEAST ECO1_YEAST EPL1_YEAST EXO1_YEAST H2A1_YEAST H2A2_YEAST HAM1_YEAST HMI1_YEAST IMPX_YEAST IXR1_YEAST KTHY_YEAST LIF1_YEAST MAG_YEAST MEC1_YEAST MEC3_YEAST MGMT_YEAST MGS1_YEAST MKT1_YEAST MLH1_YEAST MLP1_YEAST MMS4_YEAST MSH1_YEAST MSH2_YEAST MSH3_YEAST MSH4_YEAST MSH5_YEAST MSH6_YEAST MSI1_YEAST NSE1_YEAST NSE3_YEAST NSE4_YEAST NSE5_YEAST NTG1_YEAST NTG2_YEAST OGG1_YEAST PAN3_YEAST PHR_YEAST PIF1_YEAST PMS1_YEAST PP11_YEAST PSO2_YEAST RAD1_YEAST RAD2_YEAST RAD3_YEAST RAD4_YEAST RAD5_YEAST RAD7_YEAST RAD9_YEAST REV1_YEAST REV7_YEAST RFC1_YEAST RPH1_YEAST SCC2_YEAST SIR2_YEAST SMC5_YEAST SMC6_YEAST SRS2_YEAST SSL1_YEAST SWC4_YEAST TFB2_YEAST TFB4_YEAST TFB5_YEAST TPP1_YEAST TRM2_YEAST UBC2_YEAST UBIQ_YEAST UNG_YEAST XRS2_YEAST YB78_YEAST YEN1_YEAST YHO1_YEAST YIS2_YEAST YKB7_YEAST YNG2_YEAST |
| base-excision repair( GO:0006284 ) | OGG1_ARCFU | EXO1_DROME OGG1_DROME | 3MG1_ECOLI 3MG2_ECOLI CHO_ECOLI END3_ECOLI END8_ECOLI FPG_ECOLI MUTY_ECOLI UNG_ECOLI UVRA_ECOLI UVRB_ECOLI UVRC_ECOLI | 3MG_HUMAN APTX_HUMAN EXO1_HUMAN MBD4_HUMAN OGG1_HUMAN P53_HUMAN TDG_HUMAN UNG2_HUMAN UNG_HUMAN | APN1_YEAST DNLI_YEAST DPOD_YEAST EXO1_YEAST MAG_YEAST NTG1_YEAST NTG2_YEAST OGG1_YEAST PCNA_YEAST UNG_YEAST |
| base-excision repair, AP site formation( GO:0006285 ) | | | | | NTG1_YEAST NTG2_YEAST OGG1_YEAST |
| depurination( GO:0045007 ) | | | | | |
| depyrimidination( GO:0045008 ) | | | | | |
| base-excision repair, base-free sugar-phosphate removal( GO:0006286 ) | | | | | |
| base-excision repair, DNA ligation( GO:0006288 ) | | | | HMG1_HUMAN HMG2_HUMAN | |
| base-excision repair, gap-filling( GO:0006287 ) | | | | | DPO4_YEAST |
| bypass DNA synthesis( GO:0019985 ) | | | | | |
| DNA dealkylation( GO:0006307 ) | OGT_ARCFU | | | 3MG_HUMAN | MAG_YEAST MGMT_YEAST |
| DNA ligation( GO:0006266 ) | | | | KU70_HUMAN MGMT_HUMAN | DNLI_YEAST |
| DNA replication proofreading( GO:0045004 ) | | | | | |
| double-strand break repair( GO:0006302 ) | | BLM_DROME MEI9_DROME | | FEN1_HUMAN KIP1_HUMAN KU86_HUMAN POLS_HUMAN TERA_HUMAN | DPO4_YEAST PSO2_YEAST RAD5_YEAST RFA1_YEAST RFA2_YEAST RFA3_YEAST SMC1_YEAST |
| double-strand break repair via homologous recombination( GO:0000724 ) | | | | | KU70_YEAST KU80_YEAST SCC2_YEAST SCC4_YEAST YHO1_YEAST |
| double-strand break repair via break-induced replication( GO:0000727 ) | | | | | XRS2_YEAST |
| double-strand break repair via synthesis-dependent strand annealing( GO:0045003 ) | | BLM_DROME | | | |
| DNA double-strand break processing (part of synthesis-dept. strand annealing)( GO:0000729 ) | | | | | |
| DNA recombinase assembly( GO:0000730 ) | | | | | |
| DNA repair synthesis( GO:0000731 ) | | BLM_DROME | | | DPOA_YEAST DPOE_YEAST PRI2_YEAST |
| heteroduplex formation( GO:0030491 ) | | | | | |
| strand displacement( GO:0000732 ) | | | | | |
| strand invasion( GO:0042148 ) | | | | | |
| double-strand break repair via nonhomologous end-joining( GO:0006303 ) | | KU70_DROME | | KU70_HUMAN KU86_HUMAN | DNL4_YEAST DOA1_YEAST DPO4_YEAST KU70_YEAST KU80_YEAST LIF1_YEAST MCK1_YEAST RPD3_YEAST RSC1_YEAST RSC2_YEAST RSC8_YEAST SIN3_YEAST SIR2_YEAST SIR3_YEAST SIR4_YEAST SRS2_YEAST XRS2_YEAST YHO1_YEAST YNN3_YEAST |
| double-strand break repair via single-strand annealing( GO:0045002 ) | | | | | |
| DNA strand renaturation( GO:0000733 ) | | | | | |
| double-strand break repair via single-strand annealing, removal of nonhomologous ends( GO:0000736 ) | | | | | RAD1_YEAST |
| error-free DNA repair( GO:0045021 ) | | | | | SHU1_YEAST YIN2_YEAST |
| error-free postreplication DNA repair( GO:0042275 ) | | | | | |
| error-prone DNA repair( GO:0045020 ) | | | | | |
| error-prone postreplication DNA repair( GO:0042276 ) | | | | REV1_HUMAN | |
| mismatch repair( GO:0006298 ) | | MEI9_DROME MSH2_DROME MSH6_DROME PCNA_DROME | MUTH_ECOLI MUTL_ECOLI MUTS_ECOLI VSR_ECOLI | ABL1_HUMAN MLH1_HUMAN MLH3_HUMAN MSH2_HUMAN MSH3_HUMAN MSH4_HUMAN MSH5_HUMAN MSH6_HUMAN P73_HUMAN PMS1_HUMAN PMS2_HUMAN | DPB2_YEAST DPB3_YEAST DPOD_YEAST DPOE_YEAST EXO1_YEAST MLH1_YEAST MSH1_YEAST MSH2_YEAST MSH3_YEAST MSH4_YEAST MSH5_YEAST MSH6_YEAST PCNA_YEAST PMS1_YEAST RFC1_YEAST RFC2_YEAST RFC3_YEAST RFC4_YEAST RFC5_YEAST YB9Q_YEAST |
| long patch mismatch repair system( GO:0006300 ) | | | | | |
| short patch mismatch repair system( GO:0006299 ) | | | | | |
| non-recombinational repair( GO:0000726 ) | | | | | |
| nucleotide-excision repair (and GO:0045001, a synonym)( GO:0006289 ) | | EXO1_DROME MEI9_DROME PCNA_DROME XPA_DROME XPC_DROME | CHO_ECOLI UVRA_ECOLI UVRB_ECOLI UVRC_ECOLI | ATX3_HUMAN DDB1_HUMAN DDB2_HUMAN EXO1_HUMAN P53_HUMAN XPA_HUMAN XPC_HUMAN | DNLI_YEAST DPB2_YEAST DPB3_YEAST DPOD_YEAST DPOE_YEAST EXO1_YEAST PCNA_YEAST RAD2_YEAST RAD3_YEAST RAD4_YEAST RAD9_YEAST RFA1_YEAST RFA2_YEAST RFA3_YEAST SSL1_YEAST TFB1_YEAST TFB2_YEAST TFB3_YEAST |
| nucleotide-excision repair, DNA damage recognition( GO:0000715 ) | | | | | BAF1_YEAST RAD4_YEAST RAD7_YEAST |
| transcription-coupled nucleotide-excision repair, DNA damage recognition (part of NER)( GO:0000716 ) | | | | | |
| nucleotide-excision repair, DNA damage removal( GO:0000718 ) | | | | PNKP_HUMAN | |
| nucleotide-excision repair, DNA duplex unwinding( GO:0000717 ) | | | | | RAD3_YEAST SSL1_YEAST TFB1_YEAST TFB2_YEAST TFB3_YEAST |
| nucleotide-excision repair, DNA gap filling( GO:0006297 ) | | | | | |
| nucleotide-excision repair, DNA incision, 3' to lesion( GO:0006295 ) | | | | | RAD2_YEAST |
| nucleotide-excision repair, DNA incision, 5' to lesion( GO:0006296 ) | | | | | RAD1_YEAST |
| nucleotide-excision repair, preincision complex formation( GO:0006294 ) | | | | | |
| nucleotide-excision repair, preincision complex stabilization( GO:0006293 ) | | | | | |
| pyrimidine dimer repair via nucleotide excision repair( GO:0000720 ) | | | | | |
| transcription-coupled nucleotide-excision repair( GO:0006283 ) | | | | XAB2_HUMAN | |
| postreplication repair( GO:0006301 ) | | MSH2_DROME | | MSH2_HUMAN | DPOD_YEAST H2B1_YEAST MMS2_YEAST PAN2_YEAST PAN3_YEAST PCNA_YEAST RFA1_YEAST RFA2_YEAST RFA3_YEAST |
| pyrimidine dimer repair( GO:0006290 ) | | | | | |
| photoreactive repair( GO:0000719 ) | | | | | PHR_YEAST |
| recombinational repair( GO:0000725 ) | | | | | SECU_YEAST |
| regulation of DNA repair( GO:0006282 ) | | | RECX_ECOLI | POLH_HUMAN | |
| negative regulation of DNA repair( GO:0045738 ) | | | | | |
| positive regulation of DNA repair( GO:0045739 ) | | | | | |
| single strand break repair( GO:0000012 ) | | APTX_DROME | | APTX_HUMAN DNL4_HUMAN STP1_HUMAN | |
| viral DNA repair( GO:0046787 ) | | | | | |
| recruitment of helicase-primase complex to DNA lesions( GO:0046799 ) | | | | | |
